AX Pad

4 - Other hardware-specific settings

Such as:

5 - AX Configuration

Click the Configure button to enter the configuration dialog.

See Device Setup.

Automatic Live Functions

AutoSignal.ai

When this function is enabled, the system automatically performs AI processing on the live image and sets values of laser power and gain automatically. Before you run it, select properties of the sample by the ... button.

Laser power limits for each option can be set via the Configure window. See AutoSignal.ai.

Auto Laser Off

(requires: AX-SHR)

Automatic stopping of lasers. When the observation parameters such as XY stage position, focus, or brightness of the image do not change for some time, the system automatically stops laser emission and the acquired image is displayed as a still image.

Signal / Shot Noise

Indicates SNR ratio of of each channel as a color rectangle. Green = high SNR, red = low SNR.

Caution

If SNR is low (red rectangle), the Denoise.ai function may produce unpredictable results.

Denoise.ai

When this function is enabled, the system automatically performs an on the fly AI processing and the processed image is displayed during acquisition (Live / Capture / ND).

Note

The Averaging option on the AX Pad panel is always respected by the AI processing functions.

Scanning Settings

Scanner

Select the scanner to be used. The icon on the button indicates the selected scan direction (mono-directional, bi-directional).

Resonant

Faster acquisition, lower image quality.

Galvano

Slower acquisition, maximal image quality.

Averaging

The scanning is performed several times and the pixel values are averaged / integrated which reduces image noise. Leave it low for a faster frame rate. Optionally the noise reduction technique can be changed to Integration in the device settings. In such case, the frames are added to each other, not averaged.

Dwell time

Acquisition speed defined by the time spent on one pixel. Longer times improve image quality. Dwell time is analogous to exposure time on cameras.

Note

This option is available with the galvano scanner only.

Channel Series

If the Show on Pad option is selected in the experiment setup, the buttons representing different channel series modes are displayed in the panel. You can quickly switch between them.

See Lasers and Detectors.

Tip

The frame rate and frame duration values are displayed at the bottom of this section. Try change the scanning settings and see how it affects these values.

Protect NDD

(requires: MP)

This switch appears if a light path containing the NDD detector is selected. It sets gains of the PMTs to 0 in order to prevent their damage when opening the NDD detector. Whenever the user leaves an NDD light path, Protect NDD is applied automatically.

Channel Settings

Laser power

Move the first slider to adjust laser power. Use the switch on the left to turn the laser on or off. You can also click the buttons in the quick channel selection section to enable or disable the whole channel. Try to keep the laser power as low as possible so that the sample does not bleach too quickly.

LUD-S lasers

LUD-S lasers are controlled in three separate ranges: <0,1>, <1,10>,<10,100>. Use the arrow buttons to switch between them.

MP

In a multiphoton experiment, a single IR laser can be used to capture multiple color channels. In such case, the laser power sliders and the ON/OFF switches are synchronized across the channels.

Note

Stimulation pads (Ax, GalvoXY) can show exclamation marks over the laser lines indicating that the laser does not pass through one of the mirrors on its light path defined in the current configuration.

Gain

This slider adjusts the multiplication factor of the signal from the detector. Increasing the gain makes the image brighter but also intensifies image noise.

Offset

The specified intensity value will be subtracted from all pixels of the channel, it reduces noise. You can display or hide the Offset option in the settings window - the Acquisition tab.

Pinhole Size

Pinhole

Click the ... AU shortcut button to reset the pinhole size to the default value specified in the Configure window. The wavelength used to calculate the size of the AU (airy unit) is displayed next to the buttons, it can be changed in the settings window as well.

Note

One or two pinhole size buttons can be displayed here. To display the second button, click the button and specify a non-zero value in the Custom Position field.

See Pinhole.

Pinhole Size [AU]

Move the slider to adjust the pinhole size.

Optical Res.

Current optical resolution of the system.

Note

To achieve optimal resolution of an image, the Pixel size setting in the AX Scan Area panel should be 2.3 times smaller than the optical resolution (= Nyquist resolution).

Optical Sect.

Thickness of Optical Section indicates the FWHM (full width at half maximum) of z airy disk.

IR Laser Control

(requires: MP)

Here you can control the IR pulse lasers. You can select to hide this section in the options (AX-MP)

Emission

Click and hold the switch for 3 seconds to turn the IR pulse laser ON/OFF. The color indicator on the right will start blinking until the laser gets stable.

Shutter

Mechanical shutters control whether the laser(s) shine to the light path.

Main

This is reserved for the variable-wavelength laser.

Sub

(requires: Dual IR)

In a dual-laser system, this is the fixed-wavelength laser.

Auto Alignment

It is important to run alignment every time the wavelength of the laser is changed.

Automatic

If selected, automatic XY shift alignment will be performed after the IR laser wavelength is adjusted.

Run

Click this button to run automatic alignment at once.

Humidity

Some lasers can report humidity. If the value is displayed in red color, there may be a problem with the IR pulse laser body. In such case, stop using the IR pulse laser and immediately contact the supplier.

NIR Laser Control

(requires: NIR OBIS)

Here you can control the NIR laser.

NSPARC Control

(requires: NSPARC)

Here you can select the NSPARC detector mode.

Alignment

If the color indicator is red, alignment is needed. Click on the button to enter the Configure window directly on the NSPARC tab. If the alignment has been finished successfully, the indicator is green.

See NSPARC.

SR Mode

Super resolution mode which achieves better image quality (optical resolution). Precise alignment is needed. In this mode, an algorithm calculates the resulting value from the 5x5 array.

CF Mode, MP Mode

Confocal or Multi-photon mode. In this mode, the resulting pixel value is calculated as a sum of the 5x5 array values. Alignment is not needed.

Live Deconvolution for SR Mode

Select this option to perform real-time deconvolution on the live data when in the SR Mode. Even more details should be visible.

Virtual Pinhole

The actual pinhole is not used with the NSPARC detector. Instead, there is an adjustable zoom unit which which has a very similar effect on the image. Adjust the settings according to your preference between image resolution and brightness.

(requires: MP) In multi-photon mode, the Max button appears. If pressed, maximum of available light will be transmitted.