GA3 can be created and edited directly from Jobs.
One frame with relevant dimensions can be captured to serve as a preview.
GA3 Processing >
General Analysis 3 task can be shown in the wizard mode both before the jobrun or during runtime.Wizard in Jobs shows only the GA3 wizard part of the dialog. What will be visible in each wizard page is defined by the Visible Channels/Binaries/Tables nodes in the GA3 Results tab.
Result binaries can be exported to generate point sets - Rare events - metaphase.
Result binaries can be exported to generate region lists - Mouse embryo detection analysis.
Result color images or binaries can be used as a stimulation pattern - Stimulating objects (cells) based on their feature (intensity).
Result data tables can be exported as JOB parameters - Narrowing a Z-Stack.
General Analysis 3 To utilize more powerful analyses in the JOBS Editor module on captured images, use the advantage of the GA3 Processing > | Requires: Module: |
Note
Importing of tasks containing a GA3 recipe automatically exports the included GA3 definition into the Image > Analysis Explorer.
Main Advantages
Figure 1389. General Analysis 3 task.
Results
Result tables are internally stored in a HDF5 format (accessible via free external viewers).
Figure 1390. HDF View.
If the result table produced by the GA3 task can be classified as a Frame table (contains all required loop index columns) or Object table (contains all required loop index columns, binary object ID column and entity column), it is shown together with other jobrun features in the Jobrun Result window view elements (grid, wellplate view,...).
Figure 1391. Jobrun Result window.
Other tables are accessible in the Analysis Results window element invoked from the Jobrun Result Window toolbar.
Figure 1392. Show Custom Results button.
Figure 1393. Analysis Results window.
Please see the examples on how to use the GA3 Processing > General Analysis 3 task here: Examples (version 5.42).
Wizard before Jobrun
GA3 Processing > General Analysis 3 task placed into a wizard and set before the job is executed is shown in this Stimulating objects (cells) based on their feature (intensity) example.
Runtime Wizard
When the GA3 Processing > General Analysis 3 task is set to be Shown In Runtime, user can adjust or define GA3 analysis settings on captured samples during the acquisition. The Show In Runtime property can be conditional, the activation/deactivation can be controlled by an System > 
Expression, Conditions > 
Condition (If) or Conditions > 
Condition (If-Else) tasks. Please see this Manual region list definition example.
Average Processes an image sequence by the following processing node of the General Analysis 3 module: ND Processing & Conversions > Stack reduction > Average. | Requires: Module: |
Select a Acquisition > 
Capture placed inside a loop.
Best Focus Plane Processes an image sequence by the following processing node of the General Analysis 3 module: ND Processing & Conversions > Stack reduction > Best Focus Plane. | Requires: Module: |
Select a Acquisition > Capture placed inside a loop.
Integrate Processes an image sequence by the following processing node of the General Analysis 3 module: ND Processing & Conversions > Stack reduction > Integrate. | Requires: Module: |
Select a Acquisition > Capture placed inside a loop.
Max IP Processes an image sequence by the following processing node of the General Analysis 3 module: ND Processing & Conversions > Stack reduction > Max IP. | Requires: Module: |
Select a Acquisition > Capture placed inside a loop.
Median Processes an image sequence by the following processing node of the General Analysis 3 module: ND Processing & Conversions > Stack reduction > Median. | Requires: Module: |
Select a Acquisition > Capture placed inside a loop.
Min IP Processes an image sequence by the following processing node of the General Analysis 3 module: ND Processing & Conversions > Stack reduction > Min IP. | Requires: Module: |
Select a Acquisition > Capture placed inside a loop.
Align Processes an image sequence by the following processing node of the General Analysis 3 module: ND Processing & Conversions > Processing > Align. | Requires: Module: |
Select a Acquisition > Capture placed inside a loop.
Equalize Intensity Processes an image sequence by the following processing node of the General Analysis 3 module: ND Processing & Conversions > Processing > Equalize Intensity. | Requires: Module: |
Select a Acquisition > Capture placed inside a loop.
Stitch Processes an image sequence by the following processing node of the General Analysis 3 module: ND Processing & Conversions > Stack reduction > Stitch Multi Points. | Requires: Module: |
Select a Acquisition > Capture placed inside a loop.
Clear Temporary Data This task clears temporary data shared by several instances of General Analysis 3 tasks if they contain recipes with specific GA3 nodes supporting such sharing (e.g. Tracking). It enables the user to share such data inside an inner loop (e.g Timelapse) and clear them when outer loop (e.g. Multipoint) moves to the next position. |
(requires: General Analysis 3)